Ignite Creation Date:
2024-05-06 @ 1:09 AM
Last Modification Date:
2024-10-26 @ 11:00 AM
Study NCT ID:
NCT01745419
Status:
COMPLETED
Last Update Posted:
2016-07-28
First Post:
2012-12-05
Brief Title:
Prevalence of Different Haptoglobin Phenotypes in Patients With COPD- Frequent Exacerbators Versus Non Exacerbators
Sponsor:
Carmel Medical Center
Organization:
Carmel Medical Center
Study Overview
Official Title:
Prevalence of Different Haptoglobin Phenotypes in Patients With COPD- Frequent Exacerbators Versus Non Exacerbators
Status:
COMPLETED
Status Verified Date:
2016-07
Last Known Status:
None
Delayed Posting:
No
If Stopped, Why?:
Not Stopped
Has Expanded Access:
False
If Expanded Access, NCT#:
N/A
Has Expanded Access, NCT# Status:
N/A
Acronym:
None
Brief Summary:
Chronic obstructive pulmonary disease COPD is a common disease in smokers COPD has a slowly deteriorating course punctuated by exacerbations- acute events characterized by increasing shortness of breath and putrid sputum Exacerbations of COPD may be precipitated by several factors most commonly infections
Exacerbation frequency generally increases with declining lung function However some patients with COPD consistently experience a higher rate of exacerbations than others despite similar severity of COPD This has led researchers to postulate the existence of a distinct subgroup of frequent exacerbators Recent work has also brought attention to a subset of patients who experience remarkably few exacerbations despite significantly impaired lung function Careful characterization of both of these extreme subgroups of COPD may offer additional insights into why certain patients are prone to frequent exacerbations while others remain relatively protected
Haptoglobin Hp is a protein produced predominately by the liver In humans two types of genes for Hp exist 1 and 2 with possible combinations of these two genes- 1-1 1-2 or 2-2 The Hp 2 gene is believed to have arisen from the Hp 1 gene in human evolution Subsequently the prevalence of the Hp 2 allele has spread throughout the world probably as a result of its ability to provide a selective advantage against infectious disease The Hp 1-2 combination is a very common one In most western countries the prevalence of the Hp genotypes is 16 Hp 1-1 36 Hp 2-2 and 48 Hp 2-1
The Hp gene form has been shown to be associated with disease Specifically Hp phenotypes have been found to affect propensity to atherosclerosis in Diabetic individuals There have been several studies suggesting that the Hp 2-2 phenotype is associated with a protection against infectious complications
In view of the importance of respiratory infections on COPD exacerbations and of the gained knowledge of Haptoglobin subtypes on propensity to infection we propose to investigate whether Haptoglobin subtypes are in correlation with the frequent exacerbator phenotype of COPD We postulate that since people with Hp 1-1 are more prone to infection the frequency of the Hp 1-1 phenotype will be higher in frequent exacerbators of COPD than in non- exacerbators
To test our hypothesis we propose to determine Hp phenotype in two groups of COPD patients one with frequent exacerbations and one with no exacerbations and compare the relative frequency of the 1-1 phenotype in the two groups
Exacerbation frequency generally increases with declining lung function However some patients with COPD consistently experience a higher rate of exacerbations than others despite similar severity of COPD This has led researchers to postulate the existence of a distinct subgroup of frequent exacerbators Recent work has also brought attention to a subset of patients who experience remarkably few exacerbations despite significantly impaired lung function Careful characterization of both of these extreme subgroups of COPD may offer additional insights into why certain patients are prone to frequent exacerbations while others remain relatively protected
Haptoglobin Hp is a protein produced predominately by the liver In humans two types of genes for Hp exist 1 and 2 with possible combinations of these two genes- 1-1 1-2 or 2-2 The Hp 2 gene is believed to have arisen from the Hp 1 gene in human evolution Subsequently the prevalence of the Hp 2 allele has spread throughout the world probably as a result of its ability to provide a selective advantage against infectious disease The Hp 1-2 combination is a very common one In most western countries the prevalence of the Hp genotypes is 16 Hp 1-1 36 Hp 2-2 and 48 Hp 2-1
The Hp gene form has been shown to be associated with disease Specifically Hp phenotypes have been found to affect propensity to atherosclerosis in Diabetic individuals There have been several studies suggesting that the Hp 2-2 phenotype is associated with a protection against infectious complications
In view of the importance of respiratory infections on COPD exacerbations and of the gained knowledge of Haptoglobin subtypes on propensity to infection we propose to investigate whether Haptoglobin subtypes are in correlation with the frequent exacerbator phenotype of COPD We postulate that since people with Hp 1-1 are more prone to infection the frequency of the Hp 1-1 phenotype will be higher in frequent exacerbators of COPD than in non- exacerbators
To test our hypothesis we propose to determine Hp phenotype in two groups of COPD patients one with frequent exacerbations and one with no exacerbations and compare the relative frequency of the 1-1 phenotype in the two groups
Detailed Description:
Laboratory Procedures
Overview
3 ml of Serum will be collected and stored at 4 degrees Celsius up to one week or minus 20 degrees Celsius until delivery to the laboratory
Haptoglobin phenotype will be determined at the Department of Anatomy and Cell Biology the B Rappaport Faculty of Medicine 1 Efron st Haifa Israel The method for phenotypin Hp is protein gel electrophoresis
Serum remaining will be kept frozen in minus 70 degrees Celsius for 5 years in a freezer shelf dedicated for the Pulmonology Institute at the Serology Laboratory in Carmel Medical Center for future analysis of proteins
Haptoglobin Electrophoresis
The Haptoglobin protein is separated based on size Hp 2-2 is the largest therefore was expected to travel the shortest distance in the gel and Hp 1-1 is the smallest and therefore would travel the farthest down the gel The gel that is used for the electrophoresis was a Polyacrylamide gel Two concentrations are used in order to provide loading and separating conditions
The lower gel is a Polyacrilamide gel that contains 108 ml 1M Tris pH 88 355 ml of Acrylamide 40 115 ml of dH2O 225 μl of Ammonium persulfate APS 10 and 18 μl of tetramethylethylenediamine TEMED The upper gel is a Polyacrylamide gel that contains 9375 μl of 1M Tris pH 68 7875 μl of Acrylamide 40 57 ml of dH2O 75 μl of APS 10 and 75 μl of TEMED
The lower gel is poured in between two glass plates and left for 30 minutes to solidify Once lower gel is solidified upper gel is poured on top of it and left for 30 min to solidify Wells comb placed superiorly to upper gel in order to create wells for sample placement
The sample for each patient is prepared using 10 μl of the serum 2 μl of Hemoglobin and 12 μl of a commercial loading buffer The sample is then carefully placed in the prepared wells using a pipette 4 wells are reserved for 3 controls of Hp 2-2 Hp 2-1 and Hp 1-1 followed medially by an empty well
The western blot analysis is run in a Protean II xi cell by BIO-RAD The apparatus is assembled and an electrophoresis running buffer is added The running buffer contains 151 g of Tris 72 g of Glycine and 1000 ml of DDW The running buffer was then placed in the upper and lower reservoir of the Protean II The electrophoresis was run at 240 Volts for 3 hrs
Once the samples are finished running the gel is removed from between the glass plates The gel was then stained using a color staining solution The Solution was made using 40 mg of 33-55 tetramethyl benzidine and 20 ml of methanol This was left to mix for 15 minutes Next 2 ml of dimethyl sulfoxide is added and left to mix for 5 min This was followed by the addition of 40 ml of acetic acid 5 which is made of 2 ml AA and 38 ml of DDW Next 40 mg of potassium fericyanide dissolved in 4 ml of DDW are added Finally 600 μl of H2O2 is added to the staining solution and left to mix for 10 min
Once the staining solution is ready the gel is placed in a 22 cm by 32 cm tray and the staining solution is poured over the gel The tray is then placed on a shaker for 25 minutes Once the Gel is finished being stained it is legible Nevertheless the gel is photographed for image enhancement and data storage The gel is removed from the tray and placed in an Image Analyzer Imagequant LAS 4000 for imaging or Canon powershot sx40 hs digital camera
Data Tabulation
The data - the Haptoglobin phenotype with corresponding IDs - is gathered and tabulated into a Microsoft excel table
Overview
3 ml of Serum will be collected and stored at 4 degrees Celsius up to one week or minus 20 degrees Celsius until delivery to the laboratory
Haptoglobin phenotype will be determined at the Department of Anatomy and Cell Biology the B Rappaport Faculty of Medicine 1 Efron st Haifa Israel The method for phenotypin Hp is protein gel electrophoresis
Serum remaining will be kept frozen in minus 70 degrees Celsius for 5 years in a freezer shelf dedicated for the Pulmonology Institute at the Serology Laboratory in Carmel Medical Center for future analysis of proteins
Haptoglobin Electrophoresis
The Haptoglobin protein is separated based on size Hp 2-2 is the largest therefore was expected to travel the shortest distance in the gel and Hp 1-1 is the smallest and therefore would travel the farthest down the gel The gel that is used for the electrophoresis was a Polyacrylamide gel Two concentrations are used in order to provide loading and separating conditions
The lower gel is a Polyacrilamide gel that contains 108 ml 1M Tris pH 88 355 ml of Acrylamide 40 115 ml of dH2O 225 μl of Ammonium persulfate APS 10 and 18 μl of tetramethylethylenediamine TEMED The upper gel is a Polyacrylamide gel that contains 9375 μl of 1M Tris pH 68 7875 μl of Acrylamide 40 57 ml of dH2O 75 μl of APS 10 and 75 μl of TEMED
The lower gel is poured in between two glass plates and left for 30 minutes to solidify Once lower gel is solidified upper gel is poured on top of it and left for 30 min to solidify Wells comb placed superiorly to upper gel in order to create wells for sample placement
The sample for each patient is prepared using 10 μl of the serum 2 μl of Hemoglobin and 12 μl of a commercial loading buffer The sample is then carefully placed in the prepared wells using a pipette 4 wells are reserved for 3 controls of Hp 2-2 Hp 2-1 and Hp 1-1 followed medially by an empty well
The western blot analysis is run in a Protean II xi cell by BIO-RAD The apparatus is assembled and an electrophoresis running buffer is added The running buffer contains 151 g of Tris 72 g of Glycine and 1000 ml of DDW The running buffer was then placed in the upper and lower reservoir of the Protean II The electrophoresis was run at 240 Volts for 3 hrs
Once the samples are finished running the gel is removed from between the glass plates The gel was then stained using a color staining solution The Solution was made using 40 mg of 33-55 tetramethyl benzidine and 20 ml of methanol This was left to mix for 15 minutes Next 2 ml of dimethyl sulfoxide is added and left to mix for 5 min This was followed by the addition of 40 ml of acetic acid 5 which is made of 2 ml AA and 38 ml of DDW Next 40 mg of potassium fericyanide dissolved in 4 ml of DDW are added Finally 600 μl of H2O2 is added to the staining solution and left to mix for 10 min
Once the staining solution is ready the gel is placed in a 22 cm by 32 cm tray and the staining solution is poured over the gel The tray is then placed on a shaker for 25 minutes Once the Gel is finished being stained it is legible Nevertheless the gel is photographed for image enhancement and data storage The gel is removed from the tray and placed in an Image Analyzer Imagequant LAS 4000 for imaging or Canon powershot sx40 hs digital camera
Data Tabulation
The data - the Haptoglobin phenotype with corresponding IDs - is gathered and tabulated into a Microsoft excel table
Study Oversight
Has Oversight DMC:
None
Is a FDA Regulated Drug?:
None
Is a FDA Regulated Device?:
None
Is an Unapproved Device?:
None
Is a PPSD?:
None
Is a US Export?:
None
Is an FDA AA801 Violation?:
None